Closes March 6, 2023

Apply at https://go.illinois.edu/VisitingResSpecinLifeSciencesHPCBio

Job Summary
Process and analyze 'omics data in the HPCBio group at the Roy J. Carver Biotechnology Center.

Duties & Responsibilities

Bioinformatics data analysis:

• Responsible for bioinformatics analysis of high-throughput sequence datasets produced by customers of HPCBio. These analyses may include, but are not limited to:

◦ gene expression assessment including bulk RNA-seq, single-cell RNA-Seq, and spatial RNA-Seq data,◦ genome and transcriptome assembly and annotation,◦ analysis of ChIP-seq, BS-Seq, or other epigenomic data,◦ metagenome and microbiome data,◦ identification and calling of genomic variants◦ Support data archiving and management for HPCBio projects; maintain the HPCBio project management system.

• Perform QC and initial analysis on high-throughput sequencing data produced by the DNA sequencing facility of the Biotechnology Center. Prepare analysis results and methods reports for customers of the HPCBio group. Facilitate deposition of customer data in public repositories.
• Participate in the maintenance of the software environment, workflows, and web sites of the HPCBio group.Training:
• Train University faculty and staff regarding bioinformatics analysis techniques and best practices.
• Keep abreast of new developments in sequencing technologies and bioinformatics analyses, and propose improvements in analytical methods utilized within HPCBio and during training

Minimum Qualifications
MS degree in a field of science relevant to biological computing. Alternative degree fields will be considered/accepted if accompanied by equivalent experience (depending on nature and depth of experiences if relates to the position). Minimum of one year experience using bioinformatics methods to analyze high-throughput sequencing data.

Preferred Qualifications
Experience in teaching/training in a group setting or individually bioinformatics analysis techniques and best practices. Experience with R and/or Python. Basic high performance computational experience, such as submission of jobs on a cluster and how to monitor resource use.

Knowledge, Skills and Abilities

• Working knowledge of major software tools used in computational genomics, with a preference for experience in single-cell analysis, microbiome/metagenome work, and/or population genomics. Working knowledge of at least one scripting language (e.g. Python, Perl) or experience using R. Working knowledge of command-line Linux. Effective communication, organizational, team, and personal relations skills. Demonstrated ability to perform effectively in a professional demeanor in a diverse and fast-paced work environment consisting of multiple and changing priorities and tasks with stringent deadlines, under minimal supervision.

Appointment Information
This is a full-time visiting academic professional appointment renewable annually based on satisfactory progress in the position and continued funding. Position may become a regular, non-visiting position at a later date depending on funding and programmatic need. The expected start date is as soon as possible after the close date. Salary is commensurate with experience.

Application Procedures & Deadline Information
Applications must be received by 6:00 pm (CST) on March 6, 2023. Applications not submitted through https://go.illinois.edu/VisitingResSpecinLifeSciencesHPCBio will not be considered. Application materials must include a 1) a cover letter that clearly articulates how your qualifications and experience make you a viable candidate for this position and should address the qualifications listed above, 2) a CV or resume, and 3) the names and contact information including e-mail addresses of three professional (not personal) references. All requested information and documentation must be submitted for applications to be considered. Incomplete applications will not be reviewed. For further information about this specific position, please contact Leslie Lewin Reinhart at 217-333-0034. For questions regarding the application process, please contact 217-333-2137.

The University of Illinois System is an equal opportunity employer, including but not limited to disability and/or veteran status, and complies with all applicable state and federal employment mandates. Please visit Required Employment Notices and Posters to view our non-discrimination statement and find additional information about required background checks, sexual harassment/misconduct disclosures, COVID-19 vaccination requirement, and employment eligibility review through E-Verify.

Applicants with disabilities are encouraged to apply and may request a reasonable accommodation under the Americans with Disabilities Act (2008) to complete the application and/or interview process. Requests may be submitted through the reasonable accommodations portal, or by contacting the Accessibility & Accommodations Division of the Office for Access and Equity at 217-333-0885.

Job Type: Full-time

Pay: From $55,000.00 per year

Physical setting:

• Office

Schedule:

• Monday to Friday

Work Location: One location

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